Create Kerchunk catalog for CMEMS

Set up credentials on GFTS buckets

Credentials are stored in the gfts profile in your ~/.aws/credentials. This file is generated automatically on GFTS Jupyterhub.

You can view them with ~/.aws/credentials.

• access keys are in profile named gfts

• endpoint_url is https://s3.gra.perf.cloud.ovh.net

• region_name is gra

You should have read and write permissions to the bucket, but not delete

Rclone to copy/sync data from Copernicus Marine to GFTS bucket

Set up Rclone config file

Rclone is configured automatically on GFTS JupyterHub. You can view Rclone config file with ~/.config/rclone/rclone.conf

[cmarine]
type = s3
provider = Other
endpoint = https://s3.waw3-1.cloudferro.com
acl = public-read

[gfts]
type = s3
provider = Other
env_auth = true
region = gra
endpoint = https://s3.gra.perf.cloud.ovh.net

Copy CMEMS files with rclone

We copy CMEMS files we need to our bucket as they are not available on DestinE DEDL yet.

• 2D

./rclone copy cmarine:mdl-native-13/native/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-3D_PT1H-m_202309 gfts:gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-3D_PT1H-m_202309/
./rclone copy cmarine:mdl-native-13/native/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT15M-i_202309 gfts:gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT15M-i_202309/
./rclone copy cmarine:mdl-native-13/native/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309 gfts:gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/
./rclone copy cmarine:mdl-native-10/native/IBI_ANALYSISFORECAST_PHY_005_001/cmems_mod_ibi_phy_anfc_0.027deg-2D_PT1H-m_202211 gfts:gfts-reference-data/IBI_ANALYSISFORECAST_PHY_005_001/cmems_mod_ibi_phy_anfc_0.027deg-2D_PT1H-m_202211/

# !cat ~/.aws/credentials

import s3fs
import xarray as xr

s3 = s3fs.S3FileSystem(
    anon=False,
    profile="gfts",
    client_kwargs={
        "endpoint_url": "https://s3.gra.perf.cloud.ovh.net",
        "region_name": "gra",
    },
)

Create catalog for NWSHELF ANALYSIS FORECAST data

bucket_name = "gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309"
s3.ls(bucket_name)

['gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-3D_PT1H-m_202309']

s3.ls("gfts-reference-data/")

['gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_combined.json',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_combined.parq',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_3D.parq',
 'gfts-reference-data/IBI_ANALYSISFORECAST_PHY_005_001',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013']

s3path = "s3://gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/*/*/*.nc"

remote_files = s3.glob(s3path)
remote_files

['gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220402_20220402_R20220418_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220403_20220403_R20220418_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220404_20220404_R20220418_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220405_20220405_R20220418_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220406_20220406_R20220425_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220407_20220407_R20220425_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220408_20220408_R20220425_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220409_20220409_R20220425_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220410_20220410_R20220425_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220411_20220411_R20220425_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220412_20220412_R20220425_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220413_20220413_R20220502_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220414_20220414_R20220502_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220415_20220415_R20220502_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220416_20220416_R20220502_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220417_20220417_R20220502_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220418_20220418_R20220502_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220419_20220419_R20220502_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220420_20220420_R20220509_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220421_20220421_R20220509_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220422_20220422_R20220509_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220423_20220423_R20220509_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220424_20220424_R20220509_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220425_20220425_R20220509_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220426_20220426_R20220509_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220427_20220427_R20220516_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220428_20220428_R20220516_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220429_20220429_R20220516_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220430_20220430_R20220516_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220501_20220501_R20220516_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220502_20220502_R20220516_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220503_20220503_R20220516_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220504_20220504_R20220523_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220505_20220505_R20220523_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220506_20220506_R20220523_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220507_20220507_R20220523_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220508_20220508_R20220523_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220509_20220509_R20220523_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220510_20220510_R20220523_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220511_20220511_R20220530_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220512_20220512_R20220530_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220513_20220513_R20220530_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220514_20220514_R20220530_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220515_20220515_R20220530_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220516_20220516_R20220530_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220517_20220517_R20220530_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220518_20220518_R20220606_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220519_20220519_R20220606_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220520_20220520_R20220606_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220521_20220521_R20220606_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220522_20220522_R20220606_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220523_20220523_R20220606_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220524_20220524_R20220606_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220525_20220525_R20220613_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220526_20220526_R20220613_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220527_20220527_R20220613_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220528_20220528_R20220613_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220529_20220529_R20220613_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220530_20220530_R20220613_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220531_20220531_R20220613_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/06/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220601_20220601_R20220620_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/06/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220602_20220602_R20220620_AN02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/06/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220603_20220603_R20220620_AN03.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240412_20240412_R20240417_AN03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240413_20240413_R20240417_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240414_20240414_R20240417_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240415_20240415_R20240417_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240416_20240416_R20240417_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240417_20240417_R20240418_HC01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240418_20240418_R20240418_FC01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240419_20240419_R20240418_FC02.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240420_20240420_R20240418_FC03.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240421_20240421_R20240418_FC04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240422_20240422_R20240418_FC05.nc']

import fsspec
from kerchunk.hdf import SingleHdf5ToZarr

fs = fsspec.filesystem(
    "s3",
    anon=False,
    profile="gfts",
    client_kwargs={
        "endpoint_url": "https://s3.gra.perf.cloud.ovh.net",
        "region_name": "gra",
    },
)

fs_files = fs.glob(s3path)

fs_files

['gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220402_20220402_R20220418_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220403_20220403_R20220418_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220404_20220404_R20220418_AN06.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220405_20220405_R20220418_AN07.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220406_20220406_R20220425_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220407_20220407_R20220425_AN02.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220409_20220409_R20220425_AN04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220410_20220410_R20220425_AN05.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220411_20220411_R20220425_AN06.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220425_20220425_R20220509_AN06.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220427_20220427_R20220516_AN01.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220428_20220428_R20220516_AN02.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220430_20220430_R20220516_AN04.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2022/05/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220521_20220521_R20220606_AN04.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240413_20240413_R20240417_AN04.nc',
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 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240421_20240421_R20240418_FC04.nc',
 'gfts-reference-data/NWSHELF_ANALYSISFORECAST_PHY_004_013/cmems_mod_nws_phy_anfc_0.027deg-2D_PT1H-m_202309/2024/04/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240422_20240422_R20240418_FC05.nc']

import ujson

fs2 = fsspec.filesystem("")  # local file system to save final jsons to
so = dict(
    mode="rb", anon=True, default_fill_cache=False, default_cache_type="first"
)  # args to fs.open()
# default_fill_cache=False avoids caching data in between file chunks to lowers memory usage.

def gen_json(fs, fs2, so, file_url):
    with fs.open(file_url, **so) as infile:
        h5chunks = SingleHdf5ToZarr(infile, file_url, inline_threshold=300)
        # inline threshold adjusts the Size below which binary blocks are included directly in the output
        # a higher inline threshold can result in a larger json file but faster loading time
        name = file_url.split("/")[-1].split(".")[0]
        outf = f"{name}.json"  # file name to save json to
        print(outf)
        with fs2.open(outf, "wb") as f:
            f.write(ujson.dumps(h5chunks.translate()).encode())

%%time
for file in fs_files:
    gen_json(fs, fs2, so, file)

CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220402_20220402_R20220418_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220403_20220403_R20220418_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220404_20220404_R20220418_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220405_20220405_R20220418_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220406_20220406_R20220425_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220407_20220407_R20220425_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220408_20220408_R20220425_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220409_20220409_R20220425_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220410_20220410_R20220425_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220411_20220411_R20220425_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220412_20220412_R20220425_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220413_20220413_R20220502_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220414_20220414_R20220502_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220415_20220415_R20220502_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220416_20220416_R20220502_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220417_20220417_R20220502_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220418_20220418_R20220502_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220419_20220419_R20220502_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220420_20220420_R20220509_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220421_20220421_R20220509_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220422_20220422_R20220509_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220423_20220423_R20220509_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220424_20220424_R20220509_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220425_20220425_R20220509_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220426_20220426_R20220509_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220427_20220427_R20220516_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220428_20220428_R20220516_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220429_20220429_R20220516_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220430_20220430_R20220516_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220501_20220501_R20220516_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220502_20220502_R20220516_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220503_20220503_R20220516_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220504_20220504_R20220523_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220505_20220505_R20220523_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220506_20220506_R20220523_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220507_20220507_R20220523_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220508_20220508_R20220523_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220509_20220509_R20220523_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220510_20220510_R20220523_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220511_20220511_R20220530_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220512_20220512_R20220530_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220513_20220513_R20220530_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220514_20220514_R20220530_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220515_20220515_R20220530_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220516_20220516_R20220530_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220517_20220517_R20220530_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220518_20220518_R20220606_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220519_20220519_R20220606_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220520_20220520_R20220606_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220521_20220521_R20220606_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220522_20220522_R20220606_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220523_20220523_R20220606_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220524_20220524_R20220606_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220525_20220525_R20220613_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220526_20220526_R20220613_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220527_20220527_R20220613_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220528_20220528_R20220613_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220529_20220529_R20220613_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220530_20220530_R20220613_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220531_20220531_R20220613_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220601_20220601_R20220620_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220602_20220602_R20220620_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220603_20220603_R20220620_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220604_20220604_R20220620_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220605_20220605_R20220620_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220606_20220606_R20220620_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220607_20220607_R20220620_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220608_20220608_R20220627_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220609_20220609_R20220627_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220610_20220610_R20220627_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220611_20220611_R20220627_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220612_20220612_R20220627_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220613_20220613_R20220627_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220614_20220614_R20220627_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220615_20220615_R20220704_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220616_20220616_R20220704_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220617_20220617_R20220704_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220618_20220618_R20220704_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220619_20220619_R20220704_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220620_20220620_R20220704_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220621_20220621_R20220704_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220622_20220622_R20220711_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220623_20220623_R20220711_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220624_20220624_R20220711_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220625_20220625_R20220711_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220626_20220626_R20220711_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220627_20220627_R20220711_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220628_20220628_R20220711_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220629_20220629_R20220718_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220630_20220630_R20220718_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220701_20220701_R20220718_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220702_20220702_R20220718_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220703_20220703_R20220718_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220704_20220704_R20220718_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220705_20220705_R20220718_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220706_20220706_R20220725_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220707_20220707_R20220725_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220708_20220708_R20220725_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220709_20220709_R20220725_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220710_20220710_R20220725_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220711_20220711_R20220725_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220712_20220712_R20220725_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220713_20220713_R20220801_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220714_20220714_R20220801_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220715_20220715_R20220801_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220716_20220716_R20220801_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220717_20220717_R20220801_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220718_20220718_R20220801_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220719_20220719_R20220801_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220720_20220720_R20220808_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220721_20220721_R20220808_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220722_20220722_R20220808_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220723_20220723_R20220808_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220724_20220724_R20220808_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220725_20220725_R20220808_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220726_20220726_R20220808_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220727_20220727_R20220815_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220728_20220728_R20220815_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220729_20220729_R20220815_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220730_20220730_R20220815_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220731_20220731_R20220815_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220801_20220801_R20220815_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220802_20220802_R20220815_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220803_20220803_R20220822_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220804_20220804_R20220822_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220805_20220805_R20220822_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220806_20220806_R20220822_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220807_20220807_R20220822_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220808_20220808_R20220822_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220809_20220809_R20220822_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220810_20220810_R20220829_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220811_20220811_R20220829_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220812_20220812_R20220829_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220813_20220813_R20220829_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220814_20220814_R20220829_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220815_20220815_R20220829_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220816_20220816_R20220829_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220817_20220817_R20220905_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220818_20220818_R20220905_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220819_20220819_R20220905_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220820_20220820_R20220905_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220821_20220821_R20220905_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220822_20220822_R20220905_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220823_20220823_R20220905_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220824_20220824_R20220912_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220825_20220825_R20220912_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220826_20220826_R20220912_AN03.json
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CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220828_20220828_R20220912_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220829_20220829_R20220912_AN06.json
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CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240326_20240326_R20240408_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240327_20240327_R20240415_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240328_20240328_R20240415_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240329_20240329_R20240415_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240330_20240330_R20240415_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240331_20240331_R20240415_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240401_20240401_R20240415_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240402_20240402_R20240415_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240403_20240403_R20240410_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240404_20240404_R20240410_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240405_20240405_R20240410_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240406_20240406_R20240410_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240407_20240407_R20240410_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240408_20240408_R20240410_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240409_20240409_R20240410_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240410_20240410_R20240417_AN01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240411_20240411_R20240417_AN02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240412_20240412_R20240417_AN03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240413_20240413_R20240417_AN04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240414_20240414_R20240417_AN05.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240415_20240415_R20240417_AN06.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240416_20240416_R20240417_AN07.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240417_20240417_R20240418_HC01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240418_20240418_R20240418_FC01.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240419_20240419_R20240418_FC02.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240420_20240420_R20240418_FC03.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240421_20240421_R20240418_FC04.json
CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20240422_20240422_R20240418_FC05.json
CPU times: user 3min 37s, sys: 42.6 s, total: 4min 19s
Wall time: 14min 50s

ds = xr.open_dataset(
    "reference://",
    engine="zarr",
    backend_kwargs={
        "consolidated": False,
        "storage_options": {
            "fo": "CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_20220402_20220402_R20220418_AN04.json",
            "remote_protocol": "s3",
            "remote_options": {"anon": False},
        },
    },
)
print(ds)

<xarray.Dataset> Size: 693MB
Dimensions:    (latitude: 551, longitude: 936, time: 24)
Coordinates:
  * latitude   (latitude) float32 2kB 46.0 46.03 46.06 ... 61.23 61.25 61.28
  * longitude  (longitude) float32 4kB -16.0 -15.97 -15.94 ... 9.921 9.949 9.977
  * time       (time) datetime64[ns] 192B 2022-04-02T00:30:00 ... 2022-04-02T...
Data variables:
    mlotst     (time, latitude, longitude) float64 99MB ...
    thetao     (time, latitude, longitude) float64 99MB ...
    ubar       (time, latitude, longitude) float64 99MB ...
    uo         (time, latitude, longitude) float64 99MB ...
    vbar       (time, latitude, longitude) float64 99MB ...
    vo         (time, latitude, longitude) float64 99MB ...
    zos        (time, latitude, longitude) float64 99MB ...
Attributes: (12/13)
    Conventions:     CF-1.8
    comment:         
    contact:         https://marine.copernicus.eu/contact
    domain_name:     NWS36
    field_date:      20220402
    field_type:      mean
    ...              ...
    forecast_type:   analysis
    institution:     Nologin (Spain)
    licence:         https://marine.copernicus.eu/user-corner/service-commitm...
    references:      http://marine.copernicus.eu/
    source:          NEMO3.6
    title:           Ocean surface hourly mean fields for the North West Shel...

from kerchunk.combine import MultiZarrToZarr

json_list = fs2.glob("CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_*_*_*_*.json")

mzz = MultiZarrToZarr(
    json_list,
    remote_protocol="s3",
    remote_options={"anon": False},
    concat_dims=["time"],
    identical_dims=["latitude", "longitude"],
)

d = mzz.translate()

%%time
backend_args = {
    "consolidated": False,
    "storage_options": {
        "fo": d,
        "remote_protocol": "s3",
        "remote_options": {"anon": False},
    },
}
print(xr.open_dataset("reference://", engine="zarr", backend_kwargs=backend_args))

<xarray.Dataset> Size: 521GB
Dimensions:    (latitude: 551, longitude: 936, time: 18048)
Coordinates:
  * latitude   (latitude) float32 2kB 46.0 46.03 46.06 ... 61.23 61.25 61.28
  * longitude  (longitude) float32 4kB -16.0 -15.97 -15.94 ... 9.921 9.949 9.977
  * time       (time) datetime64[ns] 144kB 2022-04-02T00:30:00 ... 2024-04-22...
Data variables:
    mlotst     (time, latitude, longitude) float64 74GB ...
    thetao     (time, latitude, longitude) float64 74GB ...
    ubar       (time, latitude, longitude) float64 74GB ...
    uo         (time, latitude, longitude) float64 74GB ...
    vbar       (time, latitude, longitude) float64 74GB ...
    vo         (time, latitude, longitude) float64 74GB ...
    zos        (time, latitude, longitude) float64 74GB ...
Attributes: (12/13)
    Conventions:     CF-1.8
    comment:         
    contact:         https://marine.copernicus.eu/contact
    domain_name:     NWS36
    field_date:      20220402
    field_type:      mean
    ...              ...
    forecast_type:   analysis
    institution:     Nologin (Spain)
    licence:         https://marine.copernicus.eu/user-corner/service-commitm...
    references:      http://marine.copernicus.eu/
    source:          NEMO3.6
    title:           Ocean surface hourly mean fields for the North West Shel...
CPU times: user 386 ms, sys: 48 ms, total: 434 ms
Wall time: 514 ms

## do not use json because it is too big & slow
# with fs2.open('CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.json', 'wb') as f:
#    f.write(ujson.dumps(d).encode())

from kerchunk import df

df.refs_to_dataframe(d, "CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq")

import fsspec

fs = fsspec.implementations.reference.ReferenceFileSystem(
    "CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq",
    remote_protocol="s3",
    target_protocol="file",
    lazy=True,
)
dset = xr.open_dataset(
    fs.get_mapper(), engine="zarr", backend_kwargs={"consolidated": False}
)

dset

<xarray.Dataset> Size: 521GB
Dimensions:    (latitude: 551, longitude: 936, time: 18048)
Coordinates:
  * latitude   (latitude) float32 2kB 46.0 46.03 46.06 ... 61.23 61.25 61.28
  * longitude  (longitude) float32 4kB -16.0 -15.97 -15.94 ... 9.921 9.949 9.977
  * time       (time) datetime64[ns] 144kB 2022-04-02T00:30:00 ... 2024-04-22...
Data variables:
    mlotst     (time, latitude, longitude) float64 74GB ...
    thetao     (time, latitude, longitude) float64 74GB ...
    ubar       (time, latitude, longitude) float64 74GB ...
    uo         (time, latitude, longitude) float64 74GB ...
    vbar       (time, latitude, longitude) float64 74GB ...
    vo         (time, latitude, longitude) float64 74GB ...
    zos        (time, latitude, longitude) float64 74GB ...
Attributes: (12/13)
    Conventions:     CF-1.8
    comment:         
    contact:         https://marine.copernicus.eu/contact
    domain_name:     NWS36
    field_date:      20220402
    field_type:      mean
    ...              ...
    forecast_type:   analysis
    institution:     Nologin (Spain)
    licence:         https://marine.copernicus.eu/user-corner/service-commitm...
    references:      http://marine.copernicus.eu/
    source:          NEMO3.6
    title:           Ocean surface hourly mean fields for the North West Shel...

xarray.Dataset

• Dimensions:
  • latitude: 551
  • longitude: 936
  • time: 18048
• Coordinates: (3)
  • latitude
    (latitude)
    float32
    46.0 46.03 46.06 ... 61.25 61.28

    axis :

    Y

    long_name :

    Latitude

    standard_name :

    latitude

    step :

    0.02777863f

    unit_long :

    Degrees North

    units :

    degrees_north

    array([46.003643, 46.03142 , 46.0592  , ..., 61.22633 , 61.25411 , 61.281887],
          dtype=float32)

  • longitude
    (longitude)
    float32
    -16.0 -15.97 -15.94 ... 9.949 9.977

    axis :

    X

    long_name :

    Longitude

    standard_name :

    longitude

    step :

    0.02777863f

    unit_long :

    Degrees East

    units :

    degrees_east

    array([-15.996015, -15.968236, -15.940457, ...,   9.921447,   9.949225,
             9.977004], dtype=float32)

  • time
    (time)
    datetime64[ns]
    2022-04-02T00:30:00 ... 2024-04-...

    axis :

    T

    long_name :

    time

    standard_name :

    time

    array(['2022-04-02T00:30:00.000000000', '2022-04-02T01:30:00.000000000',
           '2022-04-02T02:30:00.000000000', ..., '2024-04-22T21:30:00.000000000',
           '2024-04-22T22:30:00.000000000', '2024-04-22T23:30:00.000000000'],
          dtype='datetime64[ns]')

• Data variables: (7)
  • mlotst
    (time, latitude, longitude)
    float64
    ...

    easting :

    longitude

    latitude_max :

    61.2819f

    latitude_min :

    46.0036f

    long_name :

    Ocean mixed layer thickness defined by density

    longitude_max :

    9.977f

    longitude_min :

    -15.996f

    northing :

    latitude

    standard_name :

    ocean_mixed_layer_thickness_defined_by_sigma_theta

    unit_long :

    Meters

    units :

    m

    valid_max :

    20000

    valid_min :

    -20000

    z_max :

    0.494025f

    z_min :

    0.494025f

    [9308003328 values with dtype=float64]

  • thetao
    (time, latitude, longitude)
    float64
    ...

    easting :

    longitude

    latitude_max :

    61.2819f

    latitude_min :

    46.0036f

    long_name :

    Temperature

    longitude_max :

    9.977f

    longitude_min :

    -15.996f

    northing :

    latitude

    standard_name :

    sea_water_potential_temperature

    unit_long :

    degrees_C

    units :

    degrees_C

    valid_max :

    22000

    valid_min :

    -12000

    z_max :

    0.494025f

    z_min :

    0.494025f

    [9308003328 values with dtype=float64]

  • ubar
    (time, latitude, longitude)
    float64
    ...

    easting :

    longitude

    latitude_max :

    61.2819f

    latitude_min :

    46.0036f

    long_name :

    zonal barotropic velocity

    longitude_max :

    9.977f

    longitude_min :

    -15.996f

    northing :

    latitude

    standard_name :

    barotropic_eastward_sea_water_velocity

    unit_long :

    Meters per second

    units :

    m s-1

    valid_max :

    9000

    valid_min :

    -9000

    z_max :

    0.494025f

    z_min :

    0.494025f

    [9308003328 values with dtype=float64]

  • uo
    (time, latitude, longitude)
    float64
    ...

    easting :

    longitude

    latitude_max :

    61.2819f

    latitude_min :

    46.0036f

    long_name :

    Eastward velocity

    longitude_max :

    9.977f

    longitude_min :

    -15.996f

    northing :

    latitude

    standard_name :

    eastward_sea_water_velocity

    unit_long :

    Meters per second

    units :

    m s-1

    valid_max :

    9000

    valid_min :

    -9000

    z_max :

    0.494025f

    z_min :

    0.494025f

    [9308003328 values with dtype=float64]

  • vbar
    (time, latitude, longitude)
    float64
    ...

    easting :

    longitude

    latitude_max :

    61.2819f

    latitude_min :

    46.0036f

    long_name :

    meridional barotropic velocity

    longitude_max :

    9.977f

    longitude_min :

    -15.996f

    northing :

    latitude

    standard_name :

    barotropic_northward_sea_water_velocity

    unit_long :

    Meters per second

    units :

    m s-1

    valid_max :

    9000

    valid_min :

    -9000

    z_max :

    0.494025f

    z_min :

    0.494025f

    [9308003328 values with dtype=float64]

  • vo
    (time, latitude, longitude)
    float64
    ...

    easting :

    longitude

    latitude_max :

    61.2819f

    latitude_min :

    46.0036f

    long_name :

    Northward velocity

    longitude_max :

    9.977f

    longitude_min :

    -15.996f

    northing :

    latitude

    standard_name :

    northward_sea_water_velocity

    unit_long :

    Meters per second

    units :

    m s-1

    valid_max :

    9000

    valid_min :

    -9000

    z_max :

    0.494025f

    z_min :

    0.494025f

    [9308003328 values with dtype=float64]

  • zos
    (time, latitude, longitude)
    float64
    ...

    easting :

    longitude

    latitude_max :

    61.2819f

    latitude_min :

    46.0036f

    long_name :

    Sea surface height

    longitude_max :

    9.977f

    longitude_min :

    -15.996f

    northing :

    latitude

    standard_name :

    sea_surface_height_above_geoid

    unit_long :

    Meters

    units :

    m

    valid_max :

    10000

    valid_min :

    -10000

    z_max :

    0.494025f

    z_min :

    0.494025f

    [9308003328 values with dtype=float64]

• Indexes: (3)
  • latitude
    PandasIndex

    PandasIndex(Index([ 46.00364303588867,  46.03142166137695, 46.059200286865234,
           46.086978912353516,   46.1147575378418,  46.14253616333008,
            46.17031478881836,  46.19809341430664,  46.22587203979492,
             46.2536506652832,
           ...
            61.03187942504883,  61.05965805053711,  61.08743667602539,
            61.11521530151367,  61.14299392700195, 61.170772552490234,
           61.198551177978516,   61.2263298034668,  61.25410842895508,
            61.28188705444336],
          dtype='float32', name='latitude', length=551))

  • longitude
    PandasIndex

    PandasIndex(Index([-15.996014595031738, -15.968235969543457, -15.940457344055176,
           -15.912678718566895, -15.884900093078613, -15.857121467590332,
            -15.82934284210205,  -15.80156421661377, -15.773785591125488,
           -15.746006965637207,
           ...
             9.726996421813965,   9.754775047302246,   9.782553672790527,
             9.810332298278809,    9.83811092376709,   9.865889549255371,
             9.893668174743652,   9.921446800231934,   9.949225425720215,
             9.977004051208496],
          dtype='float32', name='longitude', length=936))

  • time
    PandasIndex

    PandasIndex(DatetimeIndex(['2022-04-02 00:30:00', '2022-04-02 01:30:00',
                   '2022-04-02 02:30:00', '2022-04-02 03:30:00',
                   '2022-04-02 04:30:00', '2022-04-02 05:30:00',
                   '2022-04-02 06:30:00', '2022-04-02 07:30:00',
                   '2022-04-02 08:30:00', '2022-04-02 09:30:00',
                   ...
                   '2024-04-22 14:30:00', '2024-04-22 15:30:00',
                   '2024-04-22 16:30:00', '2024-04-22 17:30:00',
                   '2024-04-22 18:30:00', '2024-04-22 19:30:00',
                   '2024-04-22 20:30:00', '2024-04-22 21:30:00',
                   '2024-04-22 22:30:00', '2024-04-22 23:30:00'],
                  dtype='datetime64[ns]', name='time', length=18048, freq=None))

• Attributes: (13)

  Conventions :

  CF-1.8

  comment :

  contact :

  https://marine.copernicus.eu/contact

  domain_name :

  NWS36

  field_date :

  20220402

  field_type :

  mean

  forecast_range :

  04-day_analysis

  forecast_type :

  analysis

  institution :

  Nologin (Spain)

  licence :

  https://marine.copernicus.eu/user-corner/service-commitments-and-licence

  references :

  http://marine.copernicus.eu/

  source :

  NEMO3.6

  title :

  Ocean surface hourly mean fields for the North West Shelf (NWS) region

Copy the json file into remote bucket with rclone

#!rclone copy CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.json gfts:gfts-reference-data/

!rclone copy CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq gfts:gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq

s3.ls("gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq")

['gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/.zmetadata',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/latitude',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/longitude',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/mlotst',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/thetao',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/time',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/ubar',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/uo',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/vbar',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/vo',
 'gfts-reference-data/CMEMS_v6r1_NWS_PHY_NRT_NL_01hav_AN_2D_combined.parq/zos']

Create catalog for IBI ANALYSISFORECAST

bucket_name = "gfts-reference-data/IBI_ANALYSISFORECAST_PHY_005_001/cmems_mod_ibi_phy_anfc_0.027deg-2D_PT1H-m_202211"
s3.ls(bucket_name)

['gfts-reference-data/IBI_ANALYSISFORECAST_PHY_005_001/cmems_mod_ibi_phy_anfc_0.027deg-2D_PT1H-m_202211/2022',
 'gfts-reference-data/IBI_ANALYSISFORECAST_PHY_005_001/cmems_mod_ibi_phy_anfc_0.027deg-2D_PT1H-m_202211/2023',
 'gfts-reference-data/IBI_ANALYSISFORECAST_PHY_005_001/cmems_mod_ibi_phy_anfc_0.027deg-2D_PT1H-m_202211/2024']

s3path = "s3://gfts-reference-data/IBI_ANALYSISFORECAST_PHY_005_001/cmems_mod_ibi_phy_anfc_0.027deg-2D_PT1H-m_202211/*/*/*.nc"

fs_files = fs.glob(s3path)

fs2 = fsspec.filesystem("")  # local file system to save final jsons to
so = dict(
    mode="rb", anon=True, default_fill_cache=False, default_cache_type="first"
)  # args to fs.open()
# default_fill_cache=False avoids caching data in between file chunks to lowers memory usage.

%%time
for file in fs_files:
    gen_json(fs, fs2, so, file)

CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20220402_20220402_R20220418_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20220403_20220403_R20220418_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20220404_20220404_R20220418_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20220405_20220405_R20220418_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20220406_20220406_R20220425_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20220407_20220407_R20220425_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20220408_20220408_R20220425_AN03.json
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CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231107_20231107_R20231120_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231108_20231108_R20231127_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231109_20231109_R20231127_AN02.json
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CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231111_20231111_R20231127_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231112_20231112_R20231127_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231113_20231113_R20231127_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231114_20231114_R20231127_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231115_20231115_R20231204_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231116_20231116_R20231204_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231117_20231117_R20231204_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231118_20231118_R20231204_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231119_20231119_R20231204_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231120_20231120_R20231204_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231121_20231121_R20231204_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231122_20231122_R20231211_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231123_20231123_R20231211_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231124_20231124_R20231211_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231125_20231125_R20231211_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231126_20231126_R20231211_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231127_20231127_R20231211_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231128_20231128_R20231211_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231129_20231129_R20231218_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231130_20231130_R20231218_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231201_20231201_R20231218_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231202_20231202_R20231218_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231203_20231203_R20231218_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231204_20231204_R20231218_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231205_20231205_R20231218_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231206_20231206_R20231225_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231207_20231207_R20231225_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231208_20231208_R20231225_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231209_20231209_R20231225_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231210_20231210_R20231225_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231211_20231211_R20231225_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231212_20231212_R20231225_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231213_20231213_R20240101_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231214_20231214_R20240101_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231215_20231215_R20240101_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231216_20231216_R20240101_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231217_20231217_R20240101_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231218_20231218_R20240101_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231219_20231219_R20240101_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231220_20231220_R20240108_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231221_20231221_R20240108_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231222_20231222_R20240108_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231223_20231223_R20240108_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231224_20231224_R20240108_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231225_20231225_R20240108_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231226_20231226_R20240108_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231227_20231227_R20240115_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231228_20231228_R20240115_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231229_20231229_R20240115_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231230_20231230_R20240115_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20231231_20231231_R20240115_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240101_20240101_R20240115_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240102_20240102_R20240115_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240103_20240103_R20240122_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240104_20240104_R20240122_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240105_20240105_R20240122_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240106_20240106_R20240122_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240107_20240107_R20240122_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240108_20240108_R20240122_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240109_20240109_R20240122_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240110_20240110_R20240129_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240111_20240111_R20240129_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240112_20240112_R20240129_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240113_20240113_R20240129_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240114_20240114_R20240129_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240115_20240115_R20240129_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240116_20240116_R20240129_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240117_20240117_R20240205_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240118_20240118_R20240205_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240119_20240119_R20240205_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240120_20240120_R20240205_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240121_20240121_R20240205_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240122_20240122_R20240205_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240123_20240123_R20240205_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240124_20240124_R20240212_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240125_20240125_R20240212_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240126_20240126_R20240212_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240127_20240127_R20240212_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240128_20240128_R20240212_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240129_20240129_R20240212_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240130_20240130_R20240212_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240131_20240131_R20240219_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240201_20240201_R20240219_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240202_20240202_R20240219_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240203_20240203_R20240219_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240204_20240204_R20240219_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240205_20240205_R20240219_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240206_20240206_R20240219_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240207_20240207_R20240226_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240208_20240208_R20240226_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240209_20240209_R20240226_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240210_20240210_R20240226_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240211_20240211_R20240226_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240212_20240212_R20240226_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240213_20240213_R20240226_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240214_20240214_R20240304_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240215_20240215_R20240304_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240216_20240216_R20240304_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240217_20240217_R20240304_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240218_20240218_R20240304_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240219_20240219_R20240304_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240220_20240220_R20240304_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240221_20240221_R20240311_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240222_20240222_R20240311_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240223_20240223_R20240311_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240224_20240224_R20240311_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240225_20240225_R20240311_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240226_20240226_R20240311_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240227_20240227_R20240311_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240228_20240228_R20240318_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240229_20240229_R20240318_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240301_20240301_R20240318_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240302_20240302_R20240318_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240303_20240303_R20240318_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240304_20240304_R20240318_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240305_20240305_R20240318_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240306_20240306_R20240325_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240307_20240307_R20240325_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240308_20240308_R20240325_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240309_20240309_R20240325_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240310_20240310_R20240325_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240311_20240311_R20240325_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240312_20240312_R20240325_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240313_20240313_R20240401_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240314_20240314_R20240401_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240315_20240315_R20240401_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240316_20240316_R20240401_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240317_20240317_R20240401_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240318_20240318_R20240401_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240319_20240319_R20240401_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240320_20240320_R20240408_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240321_20240321_R20240408_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240322_20240322_R20240408_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240323_20240323_R20240408_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240324_20240324_R20240408_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240325_20240325_R20240408_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240326_20240326_R20240408_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240327_20240327_R20240415_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240328_20240328_R20240415_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240329_20240329_R20240415_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240330_20240330_R20240415_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240331_20240331_R20240415_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240401_20240401_R20240415_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240402_20240402_R20240415_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240403_20240403_R20240410_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240404_20240404_R20240410_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240405_20240405_R20240410_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240406_20240406_R20240410_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240407_20240407_R20240410_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240408_20240408_R20240410_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240409_20240409_R20240410_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240410_20240410_R20240417_AN01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240411_20240411_R20240417_AN02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240412_20240412_R20240417_AN03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240413_20240413_R20240417_AN04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240414_20240414_R20240417_AN05.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240415_20240415_R20240417_AN06.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240416_20240416_R20240417_AN07.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240417_20240417_R20240418_HC01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240418_20240418_R20240418_FC01.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240419_20240419_R20240418_FC02.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240420_20240420_R20240418_FC03.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240421_20240421_R20240418_FC04.json
CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_20240422_20240422_R20240418_FC05.json
CPU times: user 3min 48s, sys: 47.4 s, total: 4min 35s
Wall time: 11min 58s

json_list = fs2.glob("CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_*_*_*_*.json")

mzz = MultiZarrToZarr(
    json_list,
    remote_protocol="s3",
    remote_options={"anon": False},
    concat_dims=["time"],
    identical_dims=["latitude", "longitude"],
)

d = mzz.translate()

Save into parquet

from kerchunk import df

df.refs_to_dataframe(d, "CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_2D_combined.parq")

Copy to our bucket

!rclone copy CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_2D_combined.parq gfts:gfts-reference-data/CMEMS_v6r1_IBI_PHY_NRT_NL_01hav_2D_combined.parq